Ballgown Extractor

Ballgown extractor is a collection of scripts, written in R and python, able to manage transcriptome data obtained by a pipeline described by Petrea and collegues, which takes advantages of Hisat2, Stringtie and the R package Ballgown. In particular these scripts will allow you to extract information about single genes, tissues and gene features.

In this project there are different scripts that produces the same result:

  • A simple R script (reader.R);
  • A python script (rpy_reader.py) that takes advantage of the rpy2 library;
  • A R script spawning a shiny app (App.R), that takes advantage of shiny

Functions

Coexpression